Comparison type: Scan Local Global
Enter two sequences in FASTA format
(Check data format and maximum sequence lengths here.)

or read both sequences from a FASTA file


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Comment/ID

General options

Maximum length difference (Delta)	(max 25)
Gap opening cost	(-50 recommended for global alignment)
Gap elongation cost	(-25 recommended for global alignment)

Scanning options (Affect only scanning)

Maximum motif length (lambda)	(max 200)
Maximum number of structures	(max 10)