Software

• Foldalign version 2.1.1
  Pairwise local or global alignment. This version uses the pruning heuristic and is therefore much faster and uses less memory than the previous version. Version 2.1.1 is a minor update to version 2.1.0. The difference is that 2.1.1 compiles with newer versions of gcc (g++). The alignments produced are the same as those produced by version 2.1.0.
  [Download]

• FoldalignM version 1.0.1
  A multiple RNA structural RNA alignment method, to a large extend based on the PMcomp program.
  [Download] [Datasets].

Older versions

• Foldalign version 2.1.0
  Pairwise local or global alignment. This version uses the pruning heuristic and is therefore much faster and uses less memory than the previous version.
  [Download]

• Foldalign version 2.0.3
  This version structurally align two sequences and can handle non-pseudoknotted structure using a light weight energy model in combination with RIBOSUM like score matrices.
  [Download].