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Software

  • Foldalign version 2.1.1
    Pairwise local or global alignment. This version uses the pruning heuristic and is therefore much faster and uses less memory than the previous version. Version 2.1.1 is a minor update to version 2.1.0. The difference is that 2.1.1 compiles with newer versions of gcc (g++). The alignments produced are the same as those produced by version 2.1.0.
    [Download]

  • FoldalignM version 1.0.1
    A multiple RNA structural RNA alignment method, to a large extend based on the PMcomp program.
    [Download] [Datasets].

Older versions

  • Foldalign version 2.1.0
    Pairwise local or global alignment. This version uses the pruning heuristic and is therefore much faster and uses less memory than the previous version.
    [Download]

  • Foldalign version 2.0.3
    This version structurally align two sequences and can handle non-pseudoknotted structure using a light weight energy model in combination with RIBOSUM like score matrices.
    [Download].


Comments, questions, etc., email webmaster@foldalign.kvl.dk.

Last updated September 27th, 2005 by Jakob Hull Havgaard