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Software

  • Foldalign version 2.1.1
    Pairwise local or global alignment. This version uses the pruning heuristic and is therefore much faster and uses less memory than the previous version. Version 2.1.1 is a minor update to version 2.1.0. The difference is that 2.1.1 compiles with newer versions of gcc (g++). The alignments produced are the same as those produced by version 2.1.0.
    [Download]

  • FoldalignM version 1.0.2
    This version of FoldalignM uses version 2.1.5 of the Vienna RNA package. Note that this version can give slightly different results compared with earlier versions and the results of the WAR server
    [Download] [Datasets]

  • FoldalignM version 1.0.1
    A multiple RNA structural RNA alignment method, to a large extend based on the PMcomp program.
    [Download] [Datasets].

Older versions

  • Foldalign version 2.1.0
    Pairwise local or global alignment. This version uses the pruning heuristic and is therefore much faster and uses less memory than the previous version.
    [Download]

  • Foldalign version 2.0.3
    This version structurally align two sequences and can handle non-pseudoknotted structure using a light weight energy model in combination with RIBOSUM like score matrices.
    [Download].


Comments, questions, etc., email webmaster@foldalign.kvl.dk.

Last updated September 27th, 2005 by Jakob Hull Havgaard